J3_4WZO_010

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4WZO_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0683

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4WZO|1|14|C|698
4WZO|1|14|A|699
4WZO|1|14|G|700
*
4WZO|1|14|C|732
4WZO|1|14|G|733
4WZO|1|14|A|734
4WZO|1|14|A|735
4WZO|1|14|C|736
*
4WZO|1|14|G|760
4WZO|1|14|A|761
4WZO|1|14|U|762
4WZO|1|14|G|763

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2