J3_4XCO_001

3D structure

PDB id

4XCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Signal-sequence induced conformational changes in the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUG*CUUUAC*GAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4XCO_001 not in the Motif Atlas

Homologous match to J3_4XCO_002

Geometric discrepancy: 0.068

The information below is about J3_4XCO_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35959.1

Basepair signature

cWW-cWW-cWW-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

4XCO|1|E|G|145
4XCO|1|E|G|146
4XCO|1|E|U|147
4XCO|1|E|G|148
*
4XCO|1|E|C|182
4XCO|1|E|U|183
4XCO|1|E|U|184
4XCO|1|E|U|185
4XCO|1|E|A|186
4XCO|1|E|C|187
*
4XCO|1|E|G|231
4XCO|1|E|A|232
4XCO|1|E|C|233

Current chains

Chain E

RNA

Nearby chains