J3_4Y4P_003

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CUUUAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|1A|G|1101
4Y4P|1|1A|G|1102
4Y4P|1|1A|A|1103
4Y4P|1|1A|G|1104
*
4Y4P|1|1A|C|1126
4Y4P|1|1A|U|1127
4Y4P|1|1A|U|1128
4Y4P|1|1A|U|1129
4Y4P|1|1A|A|1130
4Y4P|1|1A|A|1131
4Y4P|1|1A|A|1132
4Y4P|1|1A|G|1133
*
4Y4P|1|1A|C|1148
4Y4P|1|1A|A|1149
4Y4P|1|1A|C|1150

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36