J3_4Y4P_020

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4Y4P|1|2A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Y4P_020 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0511

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4Y4P|1|2A|C|1306
4Y4P|1|2A|A|1307
4Y4P|1|2A|A|1308
4Y4P|1|2A|G|1309
*
4Y4P|1|2A|C|1605
4Y4P|1|2A|G|1606
4Y4P|1|2A|C|1607
4Y4P|1|2A|A|1608
4Y4P|1|2A|A|1609
4Y4P|1|2A|A|1610
4Y4P|1|2A|C|1611
*
4Y4P|1|2A|G|1620
4Y4P|1|2A|U|1621
4Y4P|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34