J3_4Y4P_068

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAGC*GCUAGUAA*UGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|2a|C|936
4Y4P|1|2a|A|937
4Y4P|1|2a|A|938
4Y4P|1|2a|G|939
4Y4P|1|2a|C|940
*
4Y4P|1|2a|G|1343
4Y4P|1|2a|C|1344
4Y4P|1|2a|U|1345
4Y4P|1|2a|A|1346
4Y4P|1|2a|G|1347
4Y4P|1|2a|U|1348
4Y4P|1|2a|A|1349
4Y4P|1|2a|A|1350
*
4Y4P|1|2a|U|1372
4Y4P|1|2a|G|1373
4Y4P|1|2a|A|1374
4Y4P|1|2a|A|1375
4Y4P|1|2a|U|1376
4Y4P|1|2a|A|1377
4Y4P|1|2a|C|1378
4Y4P|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA