J3_4YBB_036

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_036 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.0576

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4YBB|1|AA|G|46
4YBB|1|AA|C|47
*
4YBB|1|AA|G|361
4YBB|1|AA|G|362
4YBB|1|AA|A|363
4YBB|1|AA|A|364
4YBB|1|AA|U|365
4YBB|1|AA|A|366
4YBB|1|AA|U|367
*
4YBB|1|AA|A|393
4YBB|1|AA|G|394
4YBB|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16