J3_4YBB_041

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4YBB|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YBB_041 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0865

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4YBB|1|AA|C|990
4YBB|1|AA|U|991
4YBB|1|AA|U|992
4YBB|1|AA|G|993
4YBB|1|AA|A|994
4YBB|1|AA|C|995
4YBB|1|AA|A|996
4YBB|1|AA|U|997
*
4YBB|1|AA|A|1044
4YBB|1|AA|C|1045
4YBB|1|AA|A|1046
4YBB|1|AA|G|1047
*
4YBB|1|AA|C|1210
4YBB|1|AA|U|1211
4YBB|1|AA|U|1212
4YBB|1|AA|A|1213
4YBB|1|AA|C|1214
4YBB|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14