J3_4YHH_017

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4YHH|1|A|U|1212, 4YHH|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4YHH_017 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1892

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4YHH|1|A|C|990
4YHH|1|A|U|991
4YHH|1|A|U|992
4YHH|1|A|G|993
4YHH|1|A|A|994
4YHH|1|A|C|995
4YHH|1|A|A|996
4YHH|1|A|U|997
*
4YHH|1|A|A|1044
4YHH|1|A|C|1045
4YHH|1|A|A|1046
4YHH|1|A|G|1047
*
4YHH|1|A|C|1210
4YHH|1|A|U|1211
4YHH|1|A|U|1212
4YHH|1|A|A|1213
4YHH|1|A|C|1214
4YHH|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z