J3_4YPB_024

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGGGAACC*GGGUGC*GAGCCCUA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YPB|1|XA|U|1000
4YPB|1|XA|A|1001
4YPB|1|XA|G|1001|||A
4YPB|1|XA|G|1002
4YPB|1|XA|G|1003
4YPB|1|XA|A|1004
4YPB|1|XA|A|1005
4YPB|1|XA|C|1006
4YPB|1|XA|C|1007
*
4YPB|1|XA|G|1022
4YPB|1|XA|G|1023
4YPB|1|XA|G|1024
4YPB|1|XA|U|1025
4YPB|1|XA|G|1026
4YPB|1|XA|C|1027
*
4YPB|1|XA|G|1034
4YPB|1|XA|A|1035
4YPB|1|XA|G|1036
4YPB|1|XA|C|1037
4YPB|1|XA|C|1038
4YPB|1|XA|C|1039
4YPB|1|XA|U|1040
4YPB|1|XA|A|1041

Current chains

Chain XA

16S rRNA

Nearby chains