J3_4YPB_029
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YPB_029 not in the Motif Atlas
- Homologous match to J3_7RQB_005
- Geometric discrepancy: 0.0566
- The information below is about J3_7RQB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.4
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4YPB|1|YA|C|698
4YPB|1|YA|A|699
4YPB|1|YA|G|700
*
4YPB|1|YA|C|732
4YPB|1|YA|G|733
4YPB|1|YA|A|734
4YPB|1|YA|A|735
4YPB|1|YA|C|736
*
4YPB|1|YA|G|760
4YPB|1|YA|A|761
4YPB|1|YA|U|762
4YPB|1|YA|G|763
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YD
- 50S ribosomal protein L2
Coloring options: