J3_4YPB_036

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CACG*CGGUAAG*CGAGG

Length

16 nucleotides

Bulged bases

4YPB|1|YA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YPB|1|YA|C|2789
4YPB|1|YA|A|2790
4YPB|1|YA|C|2791
4YPB|1|YA|G|2792
*
4YPB|1|YA|C|2804
4YPB|1|YA|G|2805
4YPB|1|YA|G|2807
4YPB|1|YA|U|2808
4YPB|1|YA|A|2809
4YPB|1|YA|A|2810
4YPB|1|YA|G|2811
*
4YPB|1|YA|C|2889
4YPB|1|YA|G|2891
4YPB|1|YA|A|2892
4YPB|1|YA|G|2893
4YPB|1|YA|G|2894

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3