J3_4YPB_068
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- ACGUGGCUACCU*AGC*GAUGU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YPB_068 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.1843
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4YPB|1|YA|A|56
4YPB|1|YA|C|57
4YPB|1|YA|G|58
4YPB|1|YA|U|59
4YPB|1|YA|G|60
4YPB|1|YA|G|61
4YPB|1|YA|C|62
4YPB|1|YA|U|63
4YPB|1|YA|A|64
4YPB|1|YA|C|65
4YPB|1|YA|C|66
4YPB|1|YA|U|67
*
4YPB|1|YA|A|74
4YPB|1|YA|G|75
4YPB|1|YA|C|76
*
4YPB|1|YA|G|110
4YPB|1|YA|A|111
4YPB|1|YA|U|112
4YPB|1|YA|G|113
4YPB|1|YA|U|114
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y2
- 50S ribosomal protein L29
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
Coloring options: