J3_4YZV_022
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4YZV|1|XA|A|975, 4YZV|1|XA|G|976, 4YZV|1|XA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4YZV_022 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.065
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4YZV|1|XA|U|955
4YZV|1|XA|U|956
4YZV|1|XA|U|957
4YZV|1|XA|A|958
4YZV|1|XA|A|959
4YZV|1|XA|U|960
4YZV|1|XA|U|961
4YZV|1|XA|C|962
*
4YZV|1|XA|G|973
4YZV|1|XA|A|974
4YZV|1|XA|A|975
4YZV|1|XA|G|976
4YZV|1|XA|A|977
4YZV|1|XA|A|978
4YZV|1|XA|C|979
4YZV|1|XA|C|980
4YZV|1|XA|U|981
4YZV|1|XA|U|982
4YZV|1|XA|A|983
4YZV|1|XA|C|984
*
4YZV|1|XA|G|1221
4YZV|1|XA|G|1222
4YZV|1|XA|C|1223
4YZV|1|XA|G|1224
4YZV|1|XA|A|1225
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XJ
- 30S ribosomal protein S10
- Chain XM
- 30S ribosomal protein S13
- Chain XN
- 30S ribosomal protein S14 type Z
- Chain XS
- 30S ribosomal protein S19
- Chain XY
- Killer protein
Coloring options: