J3_4Z8C_048

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUG*CAG*CUUACGG

Length

15 nucleotides

Bulged bases

4Z8C|1|1a|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Z8C|1|1a|C|967
4Z8C|1|1a|C|968
4Z8C|1|1a|U|969
4Z8C|1|1a|U|970
4Z8C|1|1a|G|971
*
4Z8C|1|1a|C|1028
4Z8C|1|1a|A|1029
4Z8C|1|1a|G|1030
*
4Z8C|1|1a|C|1192
4Z8C|1|1a|U|1193
4Z8C|1|1a|U|1194
4Z8C|1|1a|A|1195
4Z8C|1|1a|C|1196
4Z8C|1|1a|G|1197
4Z8C|1|1a|G|1198

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z