J3_4ZER_004

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4ZER|1|1A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZER_004 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0496

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4ZER|1|1A|C|1352
4ZER|1|1A|A|1353
4ZER|1|1A|A|1354
4ZER|1|1A|G|1355
*
4ZER|1|1A|C|1651
4ZER|1|1A|G|1652
4ZER|1|1A|C|1653
4ZER|1|1A|A|1654
4ZER|1|1A|A|1655
4ZER|1|1A|A|1656
4ZER|1|1A|C|1657
*
4ZER|1|1A|G|1666
4ZER|1|1A|U|1667
4ZER|1|1A|G|1668

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34