3D structure

PDB id
4ZER (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4ZER_018 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0563
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

4ZER|1|2A|C|698
4ZER|1|2A|A|699
4ZER|1|2A|G|700
*
4ZER|1|2A|C|732
4ZER|1|2A|G|733
4ZER|1|2A|A|734
4ZER|1|2A|A|735
4ZER|1|2A|C|736
*
4ZER|1|2A|G|760
4ZER|1|2A|A|761
4ZER|1|2A|U|762
4ZER|1|2A|G|763

Current chains

Chain 2A
23s ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2

Coloring options:


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