J3_4ZER_019

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

4ZER|1|2A|U|1083

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|2A|G|1055
4ZER|1|2A|G|1056
4ZER|1|2A|A|1057
*
4ZER|1|2A|U|1081
4ZER|1|2A|U|1082
4ZER|1|2A|U|1083
4ZER|1|2A|A|1084
4ZER|1|2A|A|1085
4ZER|1|2A|A|1086
4ZER|1|2A|G|1087
*
4ZER|1|2A|C|1102
4ZER|1|2A|A|1103
4ZER|1|2A|C|1104

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36