J3_4ZER_026

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZER_026 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0823

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4ZER|1|2a|C|936
4ZER|1|2a|A|937
4ZER|1|2a|A|938
4ZER|1|2a|G|939
*
4ZER|1|2a|C|1344
4ZER|1|2a|U|1345
4ZER|1|2a|A|1346
4ZER|1|2a|G|1347
4ZER|1|2a|U|1348
4ZER|1|2a|A|1349
4ZER|1|2a|A|1350
*
4ZER|1|2a|U|1372
4ZER|1|2a|G|1373
4ZER|1|2a|A|1374
4ZER|1|2a|A|1375
4ZER|1|2a|U|1376
4ZER|1|2a|A|1377
4ZER|1|2a|C|1378
4ZER|1|2a|G|1379

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9