J3_4ZER_028
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4ZER|1|2a|A|975, 4ZER|1|2a|G|976, 4ZER|1|2a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4ZER_028 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.079
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4ZER|1|2a|U|955
4ZER|1|2a|U|956
4ZER|1|2a|U|957
4ZER|1|2a|A|958
4ZER|1|2a|A|959
4ZER|1|2a|U|960
4ZER|1|2a|U|961
4ZER|1|2a|C|962
*
4ZER|1|2a|G|973
4ZER|1|2a|A|974
4ZER|1|2a|A|975
4ZER|1|2a|G|976
4ZER|1|2a|A|977
4ZER|1|2a|A|978
4ZER|1|2a|C|979
4ZER|1|2a|C|980
4ZER|1|2a|U|981
4ZER|1|2a|U|982
4ZER|1|2a|A|983
4ZER|1|2a|C|984
*
4ZER|1|2a|G|1221
4ZER|1|2a|G|1222
4ZER|1|2a|C|1223
4ZER|1|2a|G|1224
4ZER|1|2a|A|1225
Current chains
- Chain 2a
- 16s ribosomal RNA
Nearby chains
- Chain 2j
- 30S ribosomal protein S10
- Chain 2m
- 30S ribosomal protein S13
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2s
- 30S ribosomal protein S19
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