J3_4ZSN_039

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

4ZSN|1|XA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZSN_039 not in the Motif Atlas

Homologous match to J3_4LFB_008

Geometric discrepancy: 0.1396

The information below is about J3_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.5

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4ZSN|1|XA|C|1116
4ZSN|1|XA|G|1117
4ZSN|1|XA|C|1118
*
4ZSN|1|XA|G|1155
4ZSN|1|XA|G|1156
4ZSN|1|XA|A|1157
4ZSN|1|XA|C|1158
*
4ZSN|1|XA|G|1181
4ZSN|1|XA|G|1182
4ZSN|1|XA|A|1183
4ZSN|1|XA|G|1184

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z