3D structure

PDB id
5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
5A2Q|1|2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5A2Q_002 not in the Motif Atlas
Homologous match to J3_4V88_033
Geometric discrepancy: 0.1029
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

5A2Q|1|2|A|938
5A2Q|1|2|U|939
5A2Q|1|2|U|940
5A2Q|1|2|C|941
*
5A2Q|1|2|G|985
5A2Q|1|2|G|986
5A2Q|1|2|A|987
5A2Q|1|2|C|988
5A2Q|1|2|C|989
5A2Q|1|2|A|990
5A2Q|1|2|G|991
5A2Q|1|2|A|992
5A2Q|1|2|G|993
*
5A2Q|1|2|C|1000
5A2Q|1|2|A|1001
5A2Q|1|2|U|1002
5A2Q|1|2|U|1003
5A2Q|1|2|U|1004

Current chains

Chain 2
18S RRNA

Nearby chains

Chain B
RIBOSOMAL PROTEIN ES1
Chain N
RIBOSOMAL PROTEIN US15
Chain O
RIBOSOMAL PROTEIN US11
Chain a
RIBOSOMAL PROTEIN ES26

Coloring options:


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