J3_5A2Q_003

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

5A2Q|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|C|1094
5A2Q|1|2|C|1095
5A2Q|1|2|G|1096
*
5A2Q|1|2|U|1136
5A2Q|1|2|U|1137
5A2Q|1|2|C|1138
5A2Q|1|2|C|1139
5A2Q|1|2|G|1140
*
5A2Q|1|2|C|1147
5A2Q|1|2|A|1148
5A2Q|1|2|A|1149
5A2Q|1|2|A|1150
5A2Q|1|2|G|1151

Current chains

Chain 2

18S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN US2

Chain V

RIBOSOMAL PROTEIN ES21

Chain W

RIBOSOMAL PROTEIN US8

Chain a

RIBOSOMAL PROTEIN ES26

Chain b

RIBOSOMAL PROTEIN ES27