J3_5A2Q_012

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

5A2Q|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|C|1391
5A2Q|1|2|U|1392
5A2Q|1|2|G|1393
5A2Q|1|2|G|1394
5A2Q|1|2|C|1395
*
5A2Q|1|2|G|1450
5A2Q|1|2|G|1451
5A2Q|1|2|A|1452
5A2Q|1|2|C|1453
5A2Q|1|2|A|1454
5A2Q|1|2|A|1455
5A2Q|1|2|G|1456
*
5A2Q|1|2|C|1470
5A2Q|1|2|C|1471
5A2Q|1|2|C|1472
5A2Q|1|2|G|1473
5A2Q|1|2|A|1474
5A2Q|1|2|G|1475
5A2Q|1|2|A|1476
5A2Q|1|2|U|1477
5A2Q|1|2|U|1478
5A2Q|1|2|G|1479

Current chains

Chain 2

18S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN US3

Chain F

RIBOSOMAL PROTEIN US7

Chain Q

RIBOSOMAL PROTEIN US9

Chain R

RIBOSOMAL PROTEIN ES17

Chain U

RIBOSOMAL PROTEIN US10

Chain c

RIBOSOMAL PROTEIN ES28

Chain d

RIBOSOMAL PROTEIN US14

Chain g

RIBOSOMAL PROTEIN RACK1