J3_5A9Z_028
3D structure
- PDB id
- 5A9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 5A9Z|1|BA|A|653||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5A9Z_028 not in the Motif Atlas
- Geometric match to J3_1KUQ_001
- Geometric discrepancy: 0.2187
- The information below is about J3_1KUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5A9Z|1|BA|C|586||||P_1
5A9Z|1|BA|G|587||||P_1
5A9Z|1|BA|G|588||||P_1
*
5A9Z|1|BA|C|651||||P_1
5A9Z|1|BA|U|652||||P_1
5A9Z|1|BA|A|653||||P_1
5A9Z|1|BA|G|654||||P_1
*
5A9Z|1|BA|C|754||||P_1
5A9Z|1|BA|G|755||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BL
- 30S ribosomal protein S8
- Chain BP
- 30S ribosomal protein S12
- Chain BS
- 30S ribosomal protein S15
- Chain BU
- 30S ribosomal protein S17
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