J3_5AA0_012
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AA0_012 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.2475
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AA0|1|BA|U|943||||P_1
5AA0|1|BA|G|944||||P_1
5AA0|1|BA|G|945||||P_1
5AA0|1|BA|A|946||||P_1
*
5AA0|1|BA|U|1235||||P_1
5AA0|1|BA|A|1236||||P_1
5AA0|1|BA|C|1237||||P_1
*
5AA0|1|BA|G|1337||||P_1
5AA0|1|BA|G|1338||||P_1
5AA0|1|BA|A|1339||||P_1
5AA0|1|BA|A|1340||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BC
- Transfer RNA; tRNA
- Chain BE
- Transfer RNA; tRNA
- Chain BM
- 30S ribosomal protein S9
- Chain BQ
- 30S ribosomal protein S13
- Chain BY
- 30S ribosomal protein Thx
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