J3_5AA0_013
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5AA0|1|BA|A|975||||P_1, 5AA0|1|BA|G|976||||P_1, 5AA0|1|BA|G|1224||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AA0_013 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.2492
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AA0|1|BA|U|955||||P_1
5AA0|1|BA|U|956||||P_1
5AA0|1|BA|U|957||||P_1
5AA0|1|BA|A|958||||P_1
5AA0|1|BA|A|959||||P_1
5AA0|1|BA|U|960||||P_1
5AA0|1|BA|U|961||||P_1
5AA0|1|BA|C|962||||P_1
*
5AA0|1|BA|G|973||||P_1
5AA0|1|BA|A|974||||P_1
5AA0|1|BA|A|975||||P_1
5AA0|1|BA|G|976||||P_1
5AA0|1|BA|A|977||||P_1
5AA0|1|BA|A|978||||P_1
5AA0|1|BA|C|979||||P_1
5AA0|1|BA|C|980||||P_1
5AA0|1|BA|U|981||||P_1
5AA0|1|BA|U|982||||P_1
5AA0|1|BA|A|983||||P_1
5AA0|1|BA|C|984||||P_1
*
5AA0|1|BA|G|1221||||P_1
5AA0|1|BA|G|1222||||P_1
5AA0|1|BA|C|1223||||P_1
5AA0|1|BA|G|1224||||P_1
5AA0|1|BA|A|1225||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BD
- Transfer RNA; tRNA
- Chain BN
- 30S ribosomal protein S10
- Chain BQ
- 30S ribosomal protein S13
- Chain BR
- 30S ribosomal protein S14 type Z
- Chain BW
- 30S ribosomal protein S19
Coloring options: