Loop J3_5AA0

3D structure

PDB id: 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å

Loop

Sequence: CGAGC*GCGUAG*CGAGUCCGAACAGGGCGCAAAG
Length: 33 nucleotides
Bulged bases: 5AA0|1|AA|C|645||||P_1, 5AA0|1|AA|C|652||||P_1, 5AA0|1|AA|A|653||||P_1, 5AA0|1|AA|A|654||||P_1
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5AA0|1|AA|C|601||||P_1
5AA0|1|AA|G|602||||P_1
5AA0|1|AA|A|603||||P_1
5AA0|1|AA|G|604||||P_1
5AA0|1|AA|C|605||||P_1
*
5AA0|1|AA|G|623||||P_1
5AA0|1|AA|C|624||||P_1
5AA0|1|AA|G|625||||P_1
5AA0|1|AA|U|626||||P_1
5AA0|1|AA|A|627||||P_1
5AA0|1|AA|G|628||||P_1
*
5AA0|1|AA|C|635||||P_1
5AA0|1|AA|G|636||||P_1
5AA0|1|AA|A|637||||P_1
5AA0|1|AA|G|638||||P_1
5AA0|1|AA|U|639||||P_1
5AA0|1|AA|C|640||||P_1
5AA0|1|AA|C|641||||P_1
5AA0|1|AA|G|642||||P_1
5AA0|1|AA|A|643||||P_1
5AA0|1|AA|A|644||||P_1
5AA0|1|AA|C|645||||P_1
5AA0|1|AA|A|646||||P_1
5AA0|1|AA|G|647||||P_1
5AA0|1|AA|G|648||||P_1
5AA0|1|AA|G|649||||P_1
5AA0|1|AA|C|650||||P_1
5AA0|1|AA|G|651||||P_1
5AA0|1|AA|C|652||||P_1
5AA0|1|AA|A|653||||P_1
5AA0|1|AA|A|654||||P_1
5AA0|1|AA|A|655||||P_1
5AA0|1|AA|G|656||||P_1

Current chains

Chain AA: 23S ribosomal RNA

Nearby chains

Chain AF: 50S ribosomal protein L4
Chain AM: 50S ribosomal protein L15
Chain Ac: 50S ribosomal protein L33
Chain Ae: 50S ribosomal protein L35

J3_5AA0_021