J3_5AA0_023
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5AA0|1|AA|A|2388||||P_1, 5AA0|1|AA|A|2426||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AA0_023 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.2424
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5AA0|1|AA|G|2282||||P_1
5AA0|1|AA|C|2283||||P_1
5AA0|1|AA|C|2284||||P_1
*
5AA0|1|AA|G|2384||||P_1
5AA0|1|AA|C|2385||||P_1
5AA0|1|AA|C|2386||||P_1
5AA0|1|AA|U|2387||||P_1
5AA0|1|AA|A|2388||||P_1
5AA0|1|AA|G|2389||||P_1
5AA0|1|AA|U|2390||||P_1
5AA0|1|AA|G|2391||||P_1
5AA0|1|AA|A|2392||||P_1
5AA0|1|AA|A|2393||||P_1
5AA0|1|AA|C|2394||||P_1
5AA0|1|AA|C|2395||||P_1
*
5AA0|1|AA|G|2421||||P_1
5AA0|1|AA|A|2422||||P_1
5AA0|1|AA|U|2423||||P_1
5AA0|1|AA|C|2424||||P_1
5AA0|1|AA|A|2425||||P_1
5AA0|1|AA|A|2426||||P_1
5AA0|1|AA|C|2427||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AM
- 50S ribosomal protein L15
- Chain AX
- 50S ribosomal protein L27
- Chain Aa
- 50S ribosomal protein L31
- Chain Ac
- 50S ribosomal protein L33
- Chain Ae
- 50S ribosomal protein L35
- Chain BC
- Transfer RNA; tRNA
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