J3_5ADY_001

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGCCGUAG*CGC*GGAACU

Length

17 nucleotides

Bulged bases

5ADY|1|A|A|108

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ADY|1|A|G|9
5ADY|1|A|G|10
5ADY|1|A|C|11
5ADY|1|A|C|12
5ADY|1|A|G|13
5ADY|1|A|U|14
5ADY|1|A|A|15
5ADY|1|A|G|16
*
5ADY|1|A|C|68
5ADY|1|A|G|69
5ADY|1|A|C|70
*
5ADY|1|A|G|106
5ADY|1|A|G|107
5ADY|1|A|A|108
5ADY|1|A|A|109
5ADY|1|A|C|110
5ADY|1|A|U|111

Current chains

Chain A

5S RRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain O

50S RIBOSOMAL PROTEIN L18

Chain V

50S RIBOSOMAL PROTEIN L25

Chain W

50S RIBOSOMAL PROTEIN L27