J3_5AFI_007
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 5AFI|1|A|U|2334||||P_1, 5AFI|1|A|A|2336||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AFI|1|A|C|2295||||P_1
5AFI|1|A|U|2296||||P_1
5AFI|1|A|A|2297||||P_1
5AFI|1|A|A|2298||||P_1
5AFI|1|A|U|2299||||P_1
*
5AFI|1|A|A|2317||||P_1
5AFI|1|A|G|2318||||P_1
5AFI|1|A|G|2319||||P_1
5AFI|1|A|U|2320||||P_1
5AFI|1|A|U|2321||||P_1
5AFI|1|A|A|2322||||P_1
5AFI|1|A|G|2323||||P_1
*
5AFI|1|A|C|2332||||P_1
5AFI|1|A|A|2333||||P_1
5AFI|1|A|U|2334||||P_1
5AFI|1|A|A|2335||||P_1
5AFI|1|A|A|2336||||P_1
5AFI|1|A|G|2337||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
- Chain v
- Transfer RNA; tRNA
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