J3_5AFI_013
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_013 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0932
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AFI|1|a|C|936||||P_1
5AFI|1|a|A|937||||P_1
5AFI|1|a|A|938||||P_1
5AFI|1|a|G|939||||P_1
*
5AFI|1|a|C|1344||||P_1
5AFI|1|a|U|1345||||P_1
5AFI|1|a|A|1346||||P_1
5AFI|1|a|G|1347||||P_1
5AFI|1|a|U|1348||||P_1
5AFI|1|a|A|1349||||P_1
5AFI|1|a|A|1350||||P_1
*
5AFI|1|a|U|1372||||P_1
5AFI|1|a|G|1373||||P_1
5AFI|1|a|A|1374||||P_1
5AFI|1|a|A|1375||||P_1
5AFI|1|a|U|1376||||P_1
5AFI|1|a|A|1377||||P_1
5AFI|1|a|C|1378||||P_1
5AFI|1|a|G|1379||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain w
- Transfer RNA; tRNA
Coloring options: