J3_5AFI_035
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_035 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.1692
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|a|U|1073||||P_1
5AFI|1|a|G|1074||||P_1
*
5AFI|1|a|U|1083||||P_1
5AFI|1|a|G|1084||||P_1
5AFI|1|a|U|1085||||P_1
5AFI|1|a|U|1086||||P_1
5AFI|1|a|G|1087||||P_1
*
5AFI|1|a|C|1098||||P_1
5AFI|1|a|G|1099||||P_1
5AFI|1|a|C|1100||||P_1
5AFI|1|a|A|1101||||P_1
5AFI|1|a|A|1102||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain e
- 30S ribosomal protein S5
- Chain u
- 30S ribosomal protein S21
Coloring options: