J3_5AFI_036
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5AFI|1|a|U|1183||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_036 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1127
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|a|U|1116||||P_1
5AFI|1|a|A|1117||||P_1
5AFI|1|a|U|1118||||P_1
*
5AFI|1|a|A|1155||||P_1
5AFI|1|a|G|1156||||P_1
5AFI|1|a|A|1157||||P_1
5AFI|1|a|C|1158||||P_1
5AFI|1|a|U|1159||||P_1
5AFI|1|a|G|1160||||P_1
5AFI|1|a|C|1161||||P_1
*
5AFI|1|a|G|1175||||P_1
5AFI|1|a|A|1176||||P_1
5AFI|1|a|G|1177||||P_1
5AFI|1|a|G|1178||||P_1
5AFI|1|a|A|1179||||P_1
5AFI|1|a|A|1180||||P_1
5AFI|1|a|G|1181||||P_1
5AFI|1|a|G|1182||||P_1
5AFI|1|a|U|1183||||P_1
5AFI|1|a|G|1184||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
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