J3_5AJ4_002

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUU*AUAAAAAU*AGU

Length

15 nucleotides

Bulged bases

5AJ4|1|AA|A|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|AA|A|41
5AJ4|1|AA|A|42
5AJ4|1|AA|U|43
5AJ4|1|AA|U|44
*
5AJ4|1|AA|A|179
5AJ4|1|AA|U|180
5AJ4|1|AA|A|181
5AJ4|1|AA|A|182
5AJ4|1|AA|A|183
5AJ4|1|AA|A|184
5AJ4|1|AA|A|185
5AJ4|1|AA|U|186
*
5AJ4|1|AA|A|212
5AJ4|1|AA|G|213
5AJ4|1|AA|U|214

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain AP

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain Ac

MITORIBOSOMAL PROTEIN MS25, MRPS25