J3_5AJ4_004

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUAAUC*GAUAGACCUUAC*GAAA

Length

23 nucleotides

Bulged bases

5AJ4|1|AA|U|580, 5AJ4|1|AA|A|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|AA|U|561
5AJ4|1|AA|A|562
5AJ4|1|AA|U|563
5AJ4|1|AA|A|564
5AJ4|1|AA|A|565
5AJ4|1|AA|U|566
5AJ4|1|AA|C|567
*
5AJ4|1|AA|G|578
5AJ4|1|AA|A|579
5AJ4|1|AA|U|580
5AJ4|1|AA|A|581
5AJ4|1|AA|G|582
5AJ4|1|AA|A|583
5AJ4|1|AA|C|584
5AJ4|1|AA|C|585
5AJ4|1|AA|U|586
5AJ4|1|AA|U|587
5AJ4|1|AA|A|588
5AJ4|1|AA|C|589
*
5AJ4|1|AA|G|706
5AJ4|1|AA|A|707
5AJ4|1|AA|A|708
5AJ4|1|AA|A|709

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AJ

MITORIBOSOMAL PROTEIN US10M, MRPS10

Chain AN

MITORIBOSOMAL PROTEIN US14M, MRPS14

Chain AY

P-SITE AND A-SITE TRNA