J3_5AJ4_006

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCAG*CACAAUCA*UAAAAACG

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|AA|C|623
5AJ4|1|AA|U|624
5AJ4|1|AA|U|625
5AJ4|1|AA|C|626
5AJ4|1|AA|A|627
5AJ4|1|AA|G|628
*
5AJ4|1|AA|C|656
5AJ4|1|AA|A|657
5AJ4|1|AA|C|658
5AJ4|1|AA|A|659
5AJ4|1|AA|A|660
5AJ4|1|AA|U|661
5AJ4|1|AA|C|662
5AJ4|1|AA|A|663
*
5AJ4|1|AA|U|671
5AJ4|1|AA|A|672
5AJ4|1|AA|A|673
5AJ4|1|AA|A|674
5AJ4|1|AA|A|675
5AJ4|1|AA|A|676
5AJ4|1|AA|C|677
5AJ4|1|AA|G|678

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AC

MITORIBOSOMAL PROTEIN US3M, MRPS24

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AG

MITORIBOSOMAL PROTEIN US7M, MRPS7

Chain AI

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain AJ

MITORIBOSOMAL PROTEIN US10M, MRPS10

Chain AN

MITORIBOSOMAL PROTEIN US14M, MRPS14

Chain Ak

MITORIBOSOMAL PROTEIN MS35, MRPS35