J3_5AJ4_009

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ4_009 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2083

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5AJ4|1|BA|C|265
5AJ4|1|BA|A|266
5AJ4|1|BA|G|267
*
5AJ4|1|BA|C|278
5AJ4|1|BA|C|279
5AJ4|1|BA|A|280
5AJ4|1|BA|A|281
5AJ4|1|BA|C|282
*
5AJ4|1|BA|G|306
5AJ4|1|BA|A|307
5AJ4|1|BA|A|308
5AJ4|1|BA|G|309

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2

Chain Ba

MITORIBOSOMAL PROTEIN ML37, MRPL37