J3_5AJ4_015
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAG*CUAUAGAGAUAGUAC*GGAAAG
- Length
- 25 nucleotides
- Bulged bases
- 5AJ4|1|BA|U|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ4|1|BA|C|8
5AJ4|1|BA|U|9
5AJ4|1|BA|A|10
5AJ4|1|BA|G|11
*
5AJ4|1|BA|C|106
5AJ4|1|BA|U|107
5AJ4|1|BA|A|108
5AJ4|1|BA|U|109
5AJ4|1|BA|A|110
5AJ4|1|BA|G|111
5AJ4|1|BA|A|112
5AJ4|1|BA|G|113
5AJ4|1|BA|A|114
5AJ4|1|BA|U|115
5AJ4|1|BA|A|116
5AJ4|1|BA|G|117
5AJ4|1|BA|U|118
5AJ4|1|BA|A|119
5AJ4|1|BA|C|120
*
5AJ4|1|BA|G|127
5AJ4|1|BA|G|127|||A
5AJ4|1|BA|A|128
5AJ4|1|BA|A|129
5AJ4|1|BA|A|130
5AJ4|1|BA|G|131
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B2
- MITORIBOSOMAL PROTEIN UL29M, MRPL47
- Chain B7
- MITORIBOSOMAL PROTEIN BL34M, MRPL34
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BU
- MITORIBOSOMAL PROTEIN BL20M, MRPL20
- Chain BX
- MITORIBOSOMAL PROTEIN UL23M, MRPL23
- Chain BY
- MITORIBOSOMAL PROTEIN UL24M, MRPL24
- Chain Be
- MITORIBOSOMAL PROTEIN ML41, MRPL41
- Chain Bh
- MITORIBOSOMAL PROTEIN ML44, MRPL44
- Chain Bn
- MITORIBOSOMAL PROTEIN ML51, MRPL51
Coloring options: