J3_5AJ4_016
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAAAUCUUAAUACUACCAUAG*CAAUUGAG*CAACAAAUUCACCAACAUAAUCCCAAAAACUAAUAACAAAC
- Length
- 71 nucleotides
- Bulged bases
- 5AJ4|1|BA|C|487, 5AJ4|1|BA|U|492, 5AJ4|1|BA|U|495, 5AJ4|1|BA|C|553, 5AJ4|1|BA|C|559, 5AJ4|1|BA|U|564, 5AJ4|1|BA|A|572, 5AJ4|1|BA|C|573, 5AJ4|1|BA|U|574, 5AJ4|1|BA|A|575, 5AJ4|1|BA|U|577, 5AJ4|1|BA|A|583
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ4|1|BA|G|481
5AJ4|1|BA|U|482
5AJ4|1|BA|A|483
5AJ4|1|BA|A|484
5AJ4|1|BA|A|485
5AJ4|1|BA|U|486
5AJ4|1|BA|C|487
5AJ4|1|BA|U|488
5AJ4|1|BA|U|489
5AJ4|1|BA|A|490
5AJ4|1|BA|A|491
5AJ4|1|BA|U|492
5AJ4|1|BA|A|493
5AJ4|1|BA|C|494
5AJ4|1|BA|U|495
5AJ4|1|BA|A|496
5AJ4|1|BA|C|497
5AJ4|1|BA|C|498
5AJ4|1|BA|A|499
5AJ4|1|BA|U|500
5AJ4|1|BA|A|501
5AJ4|1|BA|G|502
*
5AJ4|1|BA|C|522
5AJ4|1|BA|A|523
5AJ4|1|BA|A|524
5AJ4|1|BA|U|525
5AJ4|1|BA|U|526
5AJ4|1|BA|G|527
5AJ4|1|BA|A|528
5AJ4|1|BA|G|529
*
5AJ4|1|BA|C|544
5AJ4|1|BA|A|545
5AJ4|1|BA|A|546
5AJ4|1|BA|C|547
5AJ4|1|BA|A|548
5AJ4|1|BA|A|549
5AJ4|1|BA|A|550
5AJ4|1|BA|U|551
5AJ4|1|BA|U|552
5AJ4|1|BA|C|553
5AJ4|1|BA|A|554
5AJ4|1|BA|C|555
5AJ4|1|BA|C|556
5AJ4|1|BA|A|557
5AJ4|1|BA|A|558
5AJ4|1|BA|C|559
5AJ4|1|BA|A|560
5AJ4|1|BA|U|561
5AJ4|1|BA|A|562
5AJ4|1|BA|A|563
5AJ4|1|BA|U|564
5AJ4|1|BA|C|565
5AJ4|1|BA|C|566
5AJ4|1|BA|C|567
5AJ4|1|BA|A|568
5AJ4|1|BA|A|569
5AJ4|1|BA|A|570
5AJ4|1|BA|A|571
5AJ4|1|BA|A|572
5AJ4|1|BA|C|573
5AJ4|1|BA|U|574
5AJ4|1|BA|A|575
5AJ4|1|BA|A|576
5AJ4|1|BA|U|577
5AJ4|1|BA|A|578
5AJ4|1|BA|A|579
5AJ4|1|BA|C|580
5AJ4|1|BA|A|581
5AJ4|1|BA|A|582
5AJ4|1|BA|A|583
5AJ4|1|BA|C|584
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B3
- MITORIBOSOMAL PROTEIN UL30M, MRPL30
- Chain B9
- MITORIBOSOMAL PROTEIN BL36M, MRPL36
- Chain BE
- MITORIBOSOMAL PROTEIN UL3M, MRPL3
- Chain BJ
- MITORIBOSOMAL PROTEIN UL10M, MRPL10
- Chain BK
- MITORIBOSOMAL PROTEIN UL11M, MRPL11
- Chain BN
- MITORIBOSOMAL PROTEIN UL13M, MRPL13
- Chain BQ
- MITORIBOSOMAL PROTEIN UL16M, MRPL16
- Chain BU
- MITORIBOSOMAL PROTEIN BL20M, MRPL20
- Chain BV
- MITORIBOSOMAL PROTEIN BL21M, MRPL21
- Chain Bo
- MITORIBOSOMAL PROTEIN ML52, MRPL52
- Chain Bp
- MITORIBOSOMAL PROTEIN ML53, MRPL53
- Chain Bq
- MITORIBOSOMAL PROTEIN ML54, MRPL54
- Chain Bt
- MITORIBOSOMAL PROTEIN ML63, MRPL57
- Chain Bx
- MITORIBOSOMAL PROTEIN ML66, MRPS18A
Coloring options: