J3_5AJ4_017

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GU*ACUUAUUGAUCC*GAUCAAC

Length

21 nucleotides

Bulged bases

5AJ4|1|BA|C|1224, 5AJ4|1|BA|U|1229, 5AJ4|1|BA|A|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|G|1180
5AJ4|1|BA|U|1181
*
5AJ4|1|BA|A|1223
5AJ4|1|BA|C|1224
5AJ4|1|BA|U|1225
5AJ4|1|BA|U|1226
5AJ4|1|BA|A|1227
5AJ4|1|BA|U|1228
5AJ4|1|BA|U|1229
5AJ4|1|BA|G|1230
5AJ4|1|BA|A|1231
5AJ4|1|BA|U|1232
5AJ4|1|BA|C|1233
5AJ4|1|BA|C|1234
*
5AJ4|1|BA|G|1243
5AJ4|1|BA|A|1244
5AJ4|1|BA|U|1245
5AJ4|1|BA|C|1246
5AJ4|1|BA|A|1247
5AJ4|1|BA|A|1248
5AJ4|1|BA|C|1249

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain B1

MITORIBOSOMAL PROTEIN BL28M, MRPL28

Chain B6

MITORIBOSOMAL PROTEIN BL33M, MRPL33

Chain B8

MITORIBOSOMAL PROTEIN BL35M, MRPL35

Chain BP

MITORIBOSOMAL PROTEIN UL15M, MRPL15