J3_5AJ4_018

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUU*AUAUCCACCACAC*GGAG

Length

22 nucleotides

Bulged bases

5AJ4|1|AA|U|724, 5AJ4|1|AA|C|745

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|AA|C|721
5AJ4|1|AA|A|722
5AJ4|1|AA|U|723
5AJ4|1|AA|U|724
5AJ4|1|AA|U|725
*
5AJ4|1|AA|A|737
5AJ4|1|AA|U|738
5AJ4|1|AA|A|739
5AJ4|1|AA|U|740
5AJ4|1|AA|C|741
5AJ4|1|AA|C|742
5AJ4|1|AA|A|743
5AJ4|1|AA|C|744
5AJ4|1|AA|C|745
5AJ4|1|AA|A|746
5AJ4|1|AA|C|747
5AJ4|1|AA|A|748
5AJ4|1|AA|C|749
*
5AJ4|1|AA|G|778
5AJ4|1|AA|G|779
5AJ4|1|AA|A|780
5AJ4|1|AA|G|781

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AG

MITORIBOSOMAL PROTEIN US7M, MRPS7

Chain Ag

MITORIBOSOMAL PROTEIN MS29, MRPS29

Chain Bd

MITORIBOSOMAL PROTEIN ML40, MRPL40

Chain Bj

MITORIBOSOMAL PROTEIN ML46, MRPL46

Chain Bk

MITORIBOSOMAL PROTEIN ML48, MRPL48