J3_5APO_001
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 5APO|1|5|G|156||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.0803
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|C|113||||P_1
5APO|1|5|A|114||||P_1
5APO|1|5|A|115||||P_1
5APO|1|5|A|116||||P_1
5APO|1|5|U|117||||P_1
5APO|1|5|U|118||||P_1
5APO|1|5|U|119||||P_1
5APO|1|5|G|120||||P_1
5APO|1|5|A|121||||P_1
5APO|1|5|A|122||||P_1
5APO|1|5|A|123||||P_1
*
5APO|1|5|U|149||||P_1
5APO|1|5|A|150||||P_1
5APO|1|5|A|151||||P_1
5APO|1|5|U|152||||P_1
5APO|1|5|U|153||||P_1
5APO|1|5|U|154||||P_1
5APO|1|5|G|155||||P_1
5APO|1|5|G|156||||P_1
5APO|1|5|A|157||||P_1
5APO|1|5|G|158||||P_1
*
5APO|1|5|C|263||||P_1
5APO|1|5|G|264||||P_1
5APO|1|5|A|265||||P_1
5APO|1|5|A|266||||P_1
5APO|1|5|G|267||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
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