J3_5APO_014
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5APO|1|5|U|343||||P_1, 5APO|1|5|A|351||||P_1, 5APO|1|8|U|23||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_014 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0614
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|C|340||||P_1
5APO|1|5|G|341||||P_1
5APO|1|5|A|342||||P_1
5APO|1|5|U|343||||P_1
5APO|1|5|A|344||||P_1
5APO|1|5|G|345||||P_1
5APO|1|5|C|346||||P_1
5APO|1|5|G|347||||P_1
5APO|1|5|A|348||||P_1
5APO|1|5|A|349||||P_1
5APO|1|5|C|350||||P_1
5APO|1|5|A|351||||P_1
5APO|1|5|A|352||||P_1
5APO|1|5|G|353||||P_1
5APO|1|5|U|354||||P_1
5APO|1|5|A|355||||P_1
5APO|1|5|C|356||||P_1
*
5APO|1|5|G|363||||P_1
5APO|1|5|G|364||||P_1
5APO|1|5|A|365||||P_1
5APO|1|5|A|366||||P_1
5APO|1|5|A|367||||P_1
5APO|1|5|G|368||||P_1
*
5APO|1|8|C|21||||P_1
5APO|1|8|U|22||||P_1
5APO|1|8|U|23||||P_1
5APO|1|8|G|24||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
Coloring options: