J3_5APO_016
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 5APO|1|5|A|398||||P_1, 5APO|1|5|A|402||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_016 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0688
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5APO|1|5|A|369||||P_1
5APO|1|5|U|370||||P_1
5APO|1|5|G|371||||P_1
5APO|1|5|A|372||||P_1
5APO|1|5|A|373||||P_1
5APO|1|5|A|374||||P_1
5APO|1|5|A|375||||P_1
5APO|1|5|G|376||||P_1
5APO|1|5|A|377||||P_1
5APO|1|5|A|378||||P_1
5APO|1|5|C|379||||P_1
*
5APO|1|5|G|390||||P_1
5APO|1|5|A|391||||P_1
5APO|1|5|G|392||||P_1
5APO|1|5|U|393||||P_1
5APO|1|5|G|394||||P_1
5APO|1|5|A|395||||P_1
5APO|1|5|A|396||||P_1
5APO|1|5|A|397||||P_1
5APO|1|5|A|398||||P_1
5APO|1|5|A|399||||P_1
5APO|1|5|G|400||||P_1
5APO|1|5|U|401||||P_1
5APO|1|5|A|402||||P_1
5APO|1|5|C|403||||P_1
5APO|1|5|G|404||||P_1
*
5APO|1|8|C|19||||P_1
5APO|1|8|U|20||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
- Chain x
- Probable metalloprotease ARX1
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
- Chain z
- ALB1
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