J3_5APO_020
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 5APO|1|5|C|1556||||P_1, 5APO|1|5|A|1558||||P_1, 5APO|1|5|C|1581||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|A|1537||||P_1
5APO|1|5|G|1538||||P_1
5APO|1|5|A|1539||||P_1
5APO|1|5|U|1540||||P_1
5APO|1|5|G|1541||||P_1
5APO|1|5|G|1542||||P_1
*
5APO|1|5|C|1551||||P_1
5APO|1|5|G|1552||||P_1
5APO|1|5|U|1553||||P_1
5APO|1|5|U|1554||||P_1
5APO|1|5|U|1555||||P_1
5APO|1|5|C|1556||||P_1
5APO|1|5|A|1557||||P_1
5APO|1|5|A|1558||||P_1
5APO|1|5|A|1559||||P_1
5APO|1|5|G|1560||||P_1
*
5APO|1|5|C|1579||||P_1
5APO|1|5|A|1580||||P_1
5APO|1|5|C|1581||||P_1
5APO|1|5|C|1582||||P_1
5APO|1|5|A|1583||||P_1
5APO|1|5|U|1584||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L37-A
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