J3_5APO_023
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 5APO|1|5|C|2797||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_023 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0849
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5APO|1|5|G|2651||||P_1
5APO|1|5|U|2652||||P_1
5APO|1|5|C|2653||||P_1
*
5APO|1|5|G|2754||||P_1
5APO|1|5|C|2755||||P_1
5APO|1|5|C|2756||||P_1
5APO|1|5|U|2757||||P_1
5APO|1|5|A|2758||||P_1
5APO|1|5|U|2759||||P_1
5APO|1|5|C|2760||||P_1
5APO|1|5|G|2761||||P_1
5APO|1|5|A|2762||||P_1
5APO|1|5|U|2763||||P_1
5APO|1|5|C|2764||||P_1
5APO|1|5|C|2765||||P_1
*
5APO|1|5|G|2793||||P_1
5APO|1|5|G|2794||||P_1
5APO|1|5|U|2795||||P_1
5APO|1|5|G|2796||||P_1
5APO|1|5|C|2797||||P_1
5APO|1|5|C|2798||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L42-A
Coloring options: