J3_5APO_024
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 5APO|1|5|A|3172||||P_1, 5APO|1|5|G|3173||||P_1, 5APO|1|5|A|3215||||P_1, 5APO|1|5|G|3216||||P_1, 5APO|1|5|G|3219||||P_1, 5APO|1|5|A|3268||||P_1, 5APO|1|5|U|3270||||P_1, 5APO|1|5|C|3272||||P_1, 5APO|1|5|G|3276||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_024 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1638
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5APO|1|5|U|3171||||P_1
5APO|1|5|A|3172||||P_1
5APO|1|5|G|3173||||P_1
5APO|1|5|A|3174||||P_1
5APO|1|5|U|3175||||P_1
5APO|1|5|G|3176||||P_1
*
5APO|1|5|C|3212||||P_1
5APO|1|5|A|3213||||P_1
5APO|1|5|U|3214||||P_1
5APO|1|5|A|3215||||P_1
5APO|1|5|G|3216||||P_1
5APO|1|5|C|3217||||P_1
5APO|1|5|A|3218||||P_1
5APO|1|5|G|3219||||P_1
5APO|1|5|G|3220||||P_1
*
5APO|1|5|C|3265||||P_1
5APO|1|5|G|3266||||P_1
5APO|1|5|A|3267||||P_1
5APO|1|5|A|3268||||P_1
5APO|1|5|U|3269||||P_1
5APO|1|5|U|3270||||P_1
5APO|1|5|G|3271||||P_1
5APO|1|5|C|3272||||P_1
5APO|1|5|A|3273||||P_1
5APO|1|5|A|3274||||P_1
5APO|1|5|U|3275||||P_1
5APO|1|5|G|3276||||P_1
5APO|1|5|U|3277||||P_1
5APO|1|5|C|3278||||P_1
5APO|1|5|A|3279||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: