J3_5APO_026
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5APO|1|8|U|60||||P_1, 5APO|1|8|C|62||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_026 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0896
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|8|A|44||||P_1
5APO|1|8|C|45||||P_1
*
5APO|1|8|G|58||||P_1
5APO|1|8|A|59||||P_1
5APO|1|8|U|60||||P_1
5APO|1|8|A|61||||P_1
5APO|1|8|C|62||||P_1
5APO|1|8|G|63||||P_1
5APO|1|8|U|64||||P_1
*
5APO|1|8|A|96||||P_1
5APO|1|8|A|97||||P_1
5APO|1|8|U|98||||P_1
5APO|1|8|C|99||||P_1
5APO|1|8|U|100||||P_1
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: