J3_5BJO_001
3D structure
- PDB id
- 5BJO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Corn RNA aptamer in complex with DFHO, site-specific 5-iodo-U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.35 Å
Loop
- Sequence
- CGAGG*CUG*CACUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20650.1
- Basepair signature
- cWW-F-F-F-F-cSS-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5BJO|1|E|C|5
5BJO|1|E|G|6
5BJO|1|E|A|7
5BJO|1|E|G|8
5BJO|1|E|G|9
*
5BJO|1|E|C|18
5BJO|1|E|U|19
5BJO|1|E|G|20
*
5BJO|1|E|C|28
5BJO|1|E|A|29
5BJO|1|E|C|30
5BJO|1|E|U|31
5BJO|1|E|G|32
Current chains
- Chain E
- RNA (36-MER)
Nearby chains
No other chains within 10ÅColoring options: