J3_5CKK_001

3D structure

PDB id

5CKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 9DB1* deoxyribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAGAU*ATGGATCATAC*GTTTAA

Length

22 nucleotides

Bulged bases

5CKK|1|Y|DG|9, 5CKK|1|Y|DA|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5CKK|1|D|U|-2
5CKK|1|D|A|-1
5CKK|1|D|G|1
5CKK|1|D|A|2
5CKK|1|D|U|3
*
5CKK|1|Y|DA|6
5CKK|1|Y|DT|7
5CKK|1|Y|DG|8
5CKK|1|Y|DG|9
5CKK|1|Y|DA|10
5CKK|1|Y|DT|11
5CKK|1|Y|DC|12
5CKK|1|Y|DA|13
5CKK|1|Y|DT|14
5CKK|1|Y|DA|15
5CKK|1|Y|DC|16
*
5CKK|1|Y|DG|34
5CKK|1|Y|DT|35
5CKK|1|Y|DT|36
5CKK|1|Y|DT|37
5CKK|1|Y|DA|38
5CKK|1|Y|DA|39

Current chains

Chain D

RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*AP*UP*G)-3')

Chain Y

DNA (44-MER)

Nearby chains